skip to main content
Ngôn ngữ:
Giới hạn tìm kiếm: Giới hạn tìm kiếm: Dạng tài nguyên Hiển thị kết quả với: Hiển thị kết quả với: Chỉ mục

visPIG - A Web Tool for Producing Multi-Region, Multi-Track, Multi-Scale Plots of Genetic Data.(Research Article)

Scales, Matthew ; Jager, Roland ; Migliorini, Gabriele ; Houlston, Richard S. ; Henrion, Marc Y. R.

PLoS ONE, Sept 10, 2014, Vol.9(9) [Tạp chí có phản biện]

ISSN: 1932-6203

Toàn văn sẵn có

Phiên bản sẵn có
Trích dẫn Trích dẫn bởi
  • Nhan đề:
    visPIG - A Web Tool for Producing Multi-Region, Multi-Track, Multi-Scale Plots of Genetic Data.(Research Article)
  • Tác giả: Scales, Matthew ; Jager, Roland ; Migliorini, Gabriele ; Houlston, Richard S. ; Henrion, Marc Y. R.
  • Chủ đề: Chromosomes ; Web Site Management Software ; Visualization (Computer) ; Web Browsers ; Genomics
  • Là 1 phần của: PLoS ONE, Sept 10, 2014, Vol.9(9)
  • Mô tả: We present VISual Plotting Interface for Genetics (visPIG; http://vispig.icr.ac.uk), a web application to produce multi-track, multi-scale, multi-region plots of genetic data. visPIG has been designed to allow users not well versed with mathematical software packages and/or programming languages such as R [1], Matlab#194;#174;, Python, etc., to integrate data from multiple sources for interpretation and to easily create publication-ready figures. While web tools such as the UCSC Genome Browser [2] or the WashU Epigenome Browser [3] allow custom data uploads, such tools are primarily designed for data exploration. This is also true for the desktop-run Integrative Genomics Viewer (IGV) [4],[5]. Other locally run data visualisation software such as Circos [6] require significant computer skills of the user. The visPIG web application is a menu-based interface that allows users to upload custom data tracks and set track-specific parameters. Figures can be downloaded as PDF or PNG files. For sensitive data, the underlying R [1] code can also be downloaded and run locally. visPIG is multi-track: it can display many different data types (e.g association, functional annotation, intensity, interaction, heat map data,...). It also allows annotation of genes and other custom features in the plotted region(s). Data tracks can be plotted individually or on a single figure. visPIG is multi-region: it supports plotting multiple regions, be they kilo- or megabases apart or even on different chromosomes. Finally, visPIG is multi-scale: a sub-region of particular interest can be 'zoomed' in. We describe the various features of visPIG and illustrate its utility with examples. visPIG is freely available through http://vispig.icr.ac.uk under a GNU General Public License (GPLv3).
  • Ngôn ngữ: English
  • Số nhận dạng: ISSN: 1932-6203

Đang tìm Cơ sở dữ liệu bên ngoài...